Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Hela
subcellular
Whole cell
cell type
Hela

Sequenced DNA Library

library_name
GSM763533: Hela Dnase I hypersensitivity
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
210404577
Reads aligned (%)
96.0
Duplicates removed (%)
57.9
Number of peaks
103637 (qval < 1E-05)

hg19

Number of total reads
210404577
Reads aligned (%)
95.6
Duplicates removed (%)
58.9
Number of peaks
105562 (qval < 1E-05)

Base call quality data from DBCLS SRA