Antigen

Antigen Class

Histone

Antigen

H3K4me2

Cell type

Cell type Class

Prostate

Cell type

LNCAP

Primary Tissue

Prostate

Tissue Diagnosis

Carcinoma

Sample

source_name

H3K4me2_ChIP-seq_siFoxA1

cell line

LNCaP-1F5

cell type

Prostate epithelial cells derived from metastatic prostate carcinoma

genotype/variation

genetically engineered to express rat glucocorticoid receptor (Cleutjens et al., 1997).

passages

15-35

chip antibody

H3K4me2

Sequenced DNA Library

library_name

GSM759666: H3K4me2_ChIP-seq_siFoxA1

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

23545590

Reads aligned (%)

98.6

Duplicates removed (%)

7.9

Number of peaks

48544 (qval < 1E-05)

hg19

Number of total reads

23545590

Reads aligned (%)

98.2

Duplicates removed (%)

8.6

Number of peaks

48328 (qval < 1E-05)