Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Blood

Cell type

Thymocytes

MeSH Description

HEMATOPOIETIC PROGENITOR CELLS that have migrated to the THYMUS where they differentiate into T-LYMPHOCYTES. Thymocytes are classified into maturational stages based on the expression of CELL SURFACE ANTIGENS.

Sample

source_name

Rag2-/- thymocytes, input

genetic background

C57BL/6 (Rag2-/-)

genotype

Rag2-/-

cell type

thymocyte

treatment

none

chip antibody

none

Sequenced DNA Library

library_name

GSM756896: Input

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

mm10

Number of total reads

21957545

Reads aligned (%)

92.7

Duplicates removed (%)

27.5

Number of peaks

746 (qval < 1E-05)

mm9

Number of total reads

21957545

Reads aligned (%)

92.2

Duplicates removed (%)

27.4

Number of peaks

843 (qval < 1E-05)