SRX081823
GSM751472: F1r ChIP Seq input

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Neural
Cell type
Frontal cortex
NA
NA

Attributes by original data submitter

Sample

source_name
Frontal cortex
tissue
frontal cortex
strain
Cast/EiJ x 129X1/SvJ
chip-antibody
none

Sequenced DNA Library

library_name
GSM751472: F1r_ChIP_Seq_input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
135963473
Reads aligned (%)
80.3
Duplicates removed (%)
10.9
Number of peaks
1440 (qval < 1E-05)

mm9

Number of total reads
135963473
Reads aligned (%)
80.1
Duplicates removed (%)
10.9
Number of peaks
1549 (qval < 1E-05)

Base call quality data from DBCLS SRA