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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: hESC H1
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX081232
Reference Epigenome: ChIP-Seq Analysis of H4K5ac in hESC H1 Cells
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA
Attributes by original data submitter
Sample
MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
James Thompson Laboratory
BIOMATERIAL_TYPE
Cell Line
LINE
H1
LINEAGE
Embryonic Stem Cell
DIFFERENTIATION_STAGE
None
DIFFERENTIATION_METHOD
None
PASSAGE
32
MEDIUM
mTeSER
SEX
male
BATCH
H1J5p32
sample_term_id
EFO_0003042
Sequenced DNA Library
library_name
SK302
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
48192565
Reads aligned (%)
84.3
Duplicates removed (%)
3.5
Number of peaks
703 (qval < 1E-05)
hg19
Number of total reads
48192565
Reads aligned (%)
83.8
Duplicates removed (%)
4.3
Number of peaks
942 (qval < 1E-05)
Base call quality data from
DBCLS SRA