SRX081154
Reference Epigenome: ChIP-Seq Analysis of H3K36me3 in BMP4 Trophoblast Cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC derived trophoblast cells
NA
NA

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
James Thomson Laboratory
BIOMATERIAL_TYPE
Cell Line
LINE
H1
LINEAGE
Embryonic Stem Cell
DIFFERENTIATION_STAGE
Embryonic stem cell differentiated into trophoblast by treatment with BMP4
DIFFERENTIATION_METHOD
H1 cells were cultured in mTeSR1 medium without bFGF containing 50ng/mL BMP4 for 5 days
PASSAGE
28
MEDIUM
mTeSR1
SEX
male
BATCH
BMP4-6
sample_term_id
UBERON_0000088

Sequenced DNA Library

library_name
LH7
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
17134736
Reads aligned (%)
90.8
Duplicates removed (%)
3.9
Number of peaks
554 (qval < 1E-05)

hg19

Number of total reads
17134736
Reads aligned (%)
90.4
Duplicates removed (%)
4.2
Number of peaks
591 (qval < 1E-05)

Base call quality data from DBCLS SRA