SRX080436
GSM749773: Stam HPF Input 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Lung
Cell type
HPF
Tissue
lung
Description
pulmonary fibroblasts isolated from lung tissue

Attributes by original data submitter

Sample

source_name
HPF
biomaterial_provider
ScienCell
cell
HPF
cell organism
Human
cell description
Human Pulmonary Fibroblasts isolated from lung tissue
cell sex
U
antibody
Input
replicate
1

Sequenced DNA Library

library_name
GSM749773: Stam_HPF_Input_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
22671550
Reads aligned (%)
98.8
Duplicates removed (%)
1.5
Number of peaks
831 (qval < 1E-05)

hg19

Number of total reads
22671550
Reads aligned (%)
97.9
Duplicates removed (%)
2.7
Number of peaks
1003 (qval < 1E-05)

Base call quality data from DBCLS SRA