SRX080408
GSM749745: Stam HCPEpiC CTCF 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Neural
Cell type
HCPEpiC
Tissue
epithelium
Lineage
ectoderm
Description
choroid plexus epithelial cells

Attributes by original data submitter

Sample

source_name
HCPEpiC
biomaterial_provider
ScienCell
cell
HCPEpiC
cell organism
Human
cell description
Human Choroid Plexus Epithelial Cells
cell sex
U
antibody
CTCF
antibody description
rabbit polyclonal
antibody target description
CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendor name
Millipore
replicate
2

Sequenced DNA Library

library_name
GSM749745: Stam_HCPEpiC_CTCF_2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
29919219
Reads aligned (%)
97.5
Duplicates removed (%)
14.1
Number of peaks
49339 (qval < 1E-05)

hg19

Number of total reads
29919219
Reads aligned (%)
96.8
Duplicates removed (%)
15.0
Number of peaks
49247 (qval < 1E-05)

Base call quality data from DBCLS SRA