SRX080407
GSM749744: Stam NHEK Input 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Epidermis
Cell type
NHEK
Tissue
skin
Lineage
ectoderm
Description
epidermal keratinocytes

Attributes by original data submitter

Sample

source_name
NHEK
biomaterial_provider
Lonza
cell
NHEK
cell organism
Human
cell description
epidermal keratinocytes
cell karyotype
normal
cell lineage
ectoderm
cell sex
F
antibody
Input
replicate
1

Sequenced DNA Library

library_name
GSM749744: Stam_NHEK_Input_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
19766433
Reads aligned (%)
97.5
Duplicates removed (%)
2.9
Number of peaks
597 (qval < 1E-05)

hg19

Number of total reads
19766433
Reads aligned (%)
96.7
Duplicates removed (%)
4.4
Number of peaks
872 (qval < 1E-05)

Base call quality data from DBCLS SRA