Antigen

Antigen Class

TFs and others

Antigen

CTCF

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

source_name

GM12878

biomaterial_provider

GM12878

cell

GM12878

cell organism

Human

cell description

lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

cell karyotype

normal

cell lineage

mesoderm

cell sex

F

antibody

CTCF

antibody description

rabbit polyclonal

antibody target description

CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.

antibody vendor name

Millipore

replicate

2

Sequenced DNA Library

library_name

GSM749706: Stam_GM12878_CTCF_2

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

hg38

Number of total reads

31495220

Reads aligned (%)

61.1

Duplicates removed (%)

6.4

Number of peaks

37533 (qval < 1E-05)

hg19

Number of total reads

31495220

Reads aligned (%)

60.6

Duplicates removed (%)

7.3

Number of peaks

39047 (qval < 1E-05)