SRX080366
GSM749703: Stam HVMF Input 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Placenta
Cell type
HVMF
Tissue
connective
Description
villous mesenchymal fibroblast cells

Attributes by original data submitter

Sample

source_name
HVMF
biomaterial_provider
ScienCell
cell
HVMF
cell organism
Human
cell description
Human Villous Mesenchymal Fibroblast Cells
cell sex
U
antibody
Input
replicate
1

Sequenced DNA Library

library_name
GSM749703: Stam_HVMF_Input_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
31203783
Reads aligned (%)
99.1
Duplicates removed (%)
1.5
Number of peaks
885 (qval < 1E-05)

hg19

Number of total reads
31203783
Reads aligned (%)
98.1
Duplicates removed (%)
3.1
Number of peaks
1059 (qval < 1E-05)

Base call quality data from DBCLS SRA