SRX080363
GSM749700: Stam SK-N-SH RA Input 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Neural
Cell type
SK-N-SH
Primary Tissue
Brain
Tissue Diagnosis
Neuroblastoma

Attributes by original data submitter

Sample

source_name
SK-N-SH_RA
biomaterial_provider
ATCC
cell
SK-N-SH_RA
cell organism
Human
cell description
neuroblastoma cell line, treatment: differentiated with retinoic acid. (Biedler, et al. Morphology and Growth, Tumorigenicity, and Cytogenetics of Human Neuroblastoma Cells in Continuous Culture. Cancer Research 33, 2643-2652, November 1973.)
cell karyotype
cancer
cell lineage
ectoderm
cell sex
F
antibody
Input
replicate
1

Sequenced DNA Library

library_name
GSM749700: Stam_SK-N-SH_RA_Input_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
19992344
Reads aligned (%)
98.2
Duplicates removed (%)
3.4
Number of peaks
558 (qval < 1E-05)

hg19

Number of total reads
19992344
Reads aligned (%)
97.3
Duplicates removed (%)
5.1
Number of peaks
887 (qval < 1E-05)

Base call quality data from DBCLS SRA