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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: Caco-2
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX080354
GSM749691: Stam Caco-2 Input 1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Digestive tract
Cell type
Caco-2
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma
Attributes by original data submitter
Sample
source_name
Caco-2
biomaterial_provider
ATCC
cell
Caco-2
cell organism
Human
cell description
colorectal adenocarcinoma. (PMID: 1939345)
cell karyotype
cancer
cell lineage
endoderm
cell sex
M
antibody
Input
replicate
1
Sequenced DNA Library
library_name
GSM749691: Stam_Caco-2_Input_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
17312913
Reads aligned (%)
98.1
Duplicates removed (%)
1.7
Number of peaks
345 (qval < 1E-05)
hg19
Number of total reads
17312913
Reads aligned (%)
97.3
Duplicates removed (%)
3.0
Number of peaks
667 (qval < 1E-05)
Base call quality data from
DBCLS SRA