Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
HEK293
biomaterial_provider
ATCC
cell
HEK293
cell organism
Human
cell description
embryonic kidney. (PMID: 11967234)
cell karyotype
cancer
cell lineage
endoderm
cell sex
U
antibody
CTCF
antibody description
rabbit polyclonal
antibody target description
CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendor name
Millipore
replicate
2

Sequenced DNA Library

library_name
GSM749687: Stam_HEK293_CTCF_2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
43106865
Reads aligned (%)
17.4
Duplicates removed (%)
15.8
Number of peaks
33655 (qval < 1E-05)

hg38

Number of total reads
43106865
Reads aligned (%)
17.7
Duplicates removed (%)
15.1
Number of peaks
33798 (qval < 1E-05)

Base call quality data from DBCLS SRA