Antigen

Antigen Class

TFs and others

Antigen

CTCF

Cell type

Cell type Class

Kidney

Cell type

293

Primary Tissue

Kidney

Tissue Diagnosis

Normal

Sample

source_name

HEK293

biomaterial_provider

ATCC

cell

HEK293

cell organism

Human

cell description

embryonic kidney. (PMID: 11967234)

cell karyotype

cancer

cell lineage

endoderm

cell sex

U

antibody

CTCF

antibody description

rabbit polyclonal

antibody target description

CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.

antibody vendor name

Millipore

replicate

2

Sequenced DNA Library

library_name

GSM749687: Stam_HEK293_CTCF_2

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

hg38

Number of total reads

43106865

Reads aligned (%)

20.9

Duplicates removed (%)

15.1

Number of peaks

33798 (qval < 1E-05)

hg19

Number of total reads

43106865

Reads aligned (%)

20.7

Duplicates removed (%)

15.8

Number of peaks

33655 (qval < 1E-05)