SRX080249
GSM749814: ELL2 6hr ChIPSeq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ell2

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
KH2
strain
C57BL/6 (female) x 129/S (male)
cell type
mES
cell passage
10-18
chip antibody
Lin et al. 2010 (Mol. Cell)

Sequenced DNA Library

library_name
GSM749814: ELL2_6hr_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
25229179
Reads aligned (%)
91.2
Duplicates removed (%)
22.2
Number of peaks
822 (qval < 1E-05)

mm9

Number of total reads
25229179
Reads aligned (%)
91.0
Duplicates removed (%)
22.3
Number of peaks
849 (qval < 1E-05)

Base call quality data from DBCLS SRA