SRX080178
GSM747545: ES Input ChIPseq rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
ES_Input_ChIPseq
strain
Mixed (129-C57Bl/6)
cell type
Embryonic stem cells
genotype/variation
wild type

Sequenced DNA Library

library_name
GSM747545: ES_Input_ChIPseq_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
15032584
Reads aligned (%)
89.7
Duplicates removed (%)
17.8
Number of peaks
526 (qval < 1E-05)

mm9

Number of total reads
15032584
Reads aligned (%)
89.6
Duplicates removed (%)
18.0
Number of peaks
543 (qval < 1E-05)

Base call quality data from DBCLS SRA