SRX080176
GSM747543: ES H3K4me2 ChIPseq rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
ES_H3K4me2_ChIPseq
strain
Mixed (129-C57Bl/6)
cell type
Embryonic stem cells
genotype/variation
wild type
chip antibody
anti-monomethyl-H3K4 (Abcam #ab8895)

Sequenced DNA Library

library_name
GSM747543: ES_H3K4me2_ChIPseq_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
12974725
Reads aligned (%)
69.1
Duplicates removed (%)
39.1
Number of peaks
12196 (qval < 1E-05)

mm9

Number of total reads
12974725
Reads aligned (%)
69.1
Duplicates removed (%)
39.1
Number of peaks
12224 (qval < 1E-05)

Base call quality data from DBCLS SRA