SRX080174
GSM747541: ES H3K27me3 ChIPseq rep3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
ES_H3K27me3_ChIPseq
strain
Mixed (129-C57Bl/6)
cell type
Embryonic stem cells
genotype/variation
wild type
chip antibody
anti-H3K27me3 (Upstate 07-449)

Sequenced DNA Library

library_name
GSM747541: ES_H3K27me3_ChIPseq_rep3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
16609098
Reads aligned (%)
87.8
Duplicates removed (%)
33.5
Number of peaks
935 (qval < 1E-05)

mm9

Number of total reads
16609098
Reads aligned (%)
87.7
Duplicates removed (%)
33.7
Number of peaks
930 (qval < 1E-05)

Base call quality data from DBCLS SRA