SRX080167
GSM747534: ES CTCF ChIPseq rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ctcf

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
ES_CTCF_ChIPseq
strain
Mixed (129-C57Bl/6)
cell type
Embryonic stem cells
genotype/variation
wild type
chip antibody
anti-CTCF (SantaCruz #15914)

Sequenced DNA Library

library_name
GSM747534: ES_CTCF_ChIPseq_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
13988384
Reads aligned (%)
83.9
Duplicates removed (%)
33.1
Number of peaks
55246 (qval < 1E-05)

mm9

Number of total reads
13988384
Reads aligned (%)
83.7
Duplicates removed (%)
33.1
Number of peaks
55289 (qval < 1E-05)

Base call quality data from DBCLS SRA