SRX080162
GSM748558: NHEK PolII REP1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Epidermis
Cell type
NHEK
Tissue
skin
Lineage
ectoderm
Description
epidermal keratinocytes

Attributes by original data submitter

Sample

source_name
NHEK_PolII
cell line
NHEK
cell type
normal epidermal keratinocytes
chip_antibody_provider
Covance
chip_antibody_catalog
MMS-126R

Sequenced DNA Library

library_name
GSM748558: NHEK_PolII_REP1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
27750776
Reads aligned (%)
72.4
Duplicates removed (%)
84.8
Number of peaks
2600 (qval < 1E-05)

hg19

Number of total reads
27750776
Reads aligned (%)
72.0
Duplicates removed (%)
85.1
Number of peaks
2593 (qval < 1E-05)

Base call quality data from DBCLS SRA