SRX080139
GSM748535: HelaS3 PolII REP1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HelaS3_PolII
cell line
HelaS3
cell type
cervical carcinoma
chip_antibody_provider
Covance
chip_antibody_catalog
MMS-126R

Sequenced DNA Library

library_name
GSM748535: HelaS3_PolII_REP1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
7552079
Reads aligned (%)
94.4
Duplicates removed (%)
9.3
Number of peaks
15567 (qval < 1E-05)

hg19

Number of total reads
7552079
Reads aligned (%)
94.0
Duplicates removed (%)
9.4
Number of peaks
15574 (qval < 1E-05)

Base call quality data from DBCLS SRA