SRX080124
GSM748523: K562 FAIRE REP2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
chronic myeloid leukemia
cell line
K562
cell type
chronic myeloid leukemia

Sequenced DNA Library

library_name
GSM748523: K562_FAIRE_REP2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
64172695
Reads aligned (%)
97.2
Duplicates removed (%)
10.2
Number of peaks
2577 (qval < 1E-05)

hg19

Number of total reads
64172695
Reads aligned (%)
96.2
Duplicates removed (%)
12.0
Number of peaks
2393 (qval < 1E-05)

Base call quality data from DBCLS SRA