SRX080116
GSM748515: HelaS3 FAIRE REP1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
cervical carcinoma
cell line
HelaS3
cell type
cervical carcinoma

Sequenced DNA Library

library_name
GSM748515: HelaS3_FAIRE_REP1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
46497946
Reads aligned (%)
95.4
Duplicates removed (%)
6.4
Number of peaks
2051 (qval < 1E-05)

hg19

Number of total reads
46497946
Reads aligned (%)
94.0
Duplicates removed (%)
9.3
Number of peaks
1892 (qval < 1E-05)

Base call quality data from DBCLS SRA