SRX080049
GSM749526: H3K4me3 untreated NB4 ChIPseq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
NB-4
Primary Tissue
Blood
Site of Extraction
Bone Marrow
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
NB4 cells (leukemic), untreated, H3K4me3 ChIP-Seq
cell line
NB4
cell type
leukemic cells
treatment
none
chip antibody
anti-H3K4me3
antibody vendor
Diagenode
antibody lot
HS-0010

Sequenced DNA Library

library_name
GSM749526: H3K4me3_untreated_NB4_ChIPseq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
14270987
Reads aligned (%)
82.6
Duplicates removed (%)
52.8
Number of peaks
14703 (qval < 1E-05)

hg19

Number of total reads
14270987
Reads aligned (%)
82.3
Duplicates removed (%)
53.3
Number of peaks
14608 (qval < 1E-05)

Base call quality data from DBCLS SRA