SRX080048
GSM749525: H3K4me1 untreated NB4 ChIPseq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Blood
Cell type
NB-4
Primary Tissue
Blood
Site of Extraction
Bone Marrow
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
NB4 cells (leukemic), untreated, H3K4me1 ChIP-Seq
cell line
NB4
cell type
leukemic cells
treatment
none
chip antibody
anti-H3K4me1
antibody vendor
Diagenode
antibody lot
A399-001

Sequenced DNA Library

library_name
GSM749525: H3K4me1_untreated_NB4_ChIPseq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
5009379
Reads aligned (%)
95.5
Duplicates removed (%)
46.1
Number of peaks
28 (qval < 1E-05)

hg19

Number of total reads
5009379
Reads aligned (%)
95.1
Duplicates removed (%)
46.8
Number of peaks
48 (qval < 1E-05)

Base call quality data from DBCLS SRA