SRX079871
GSM746565: H3K9me3 G1E ChIPSeq rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me3

Cell type

Cell type Class
Blood
Cell type
G1E
Tissue
Blood
Lineage
cellLine
Description
Gata1- erythroid progenitor

Attributes by original data submitter

Sample

source_name
G1E cells
strain
129
genotype/variation
Gata1-null
developmental stage/cell type
Erythroid committed, immature progenitor murine cell line
chip antibody target
H3K9me3
chip_antibody_provider
Abcam
chip_antibody_catalog
ab8898
chip_antibody_lot
unknown

Sequenced DNA Library

library_name
GSM746565: H3K9me3_G1E_ChIPSeq_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
58151562
Reads aligned (%)
94.3
Duplicates removed (%)
27.5
Number of peaks
25971 (qval < 1E-05)

mm9

Number of total reads
58151562
Reads aligned (%)
93.8
Duplicates removed (%)
27.4
Number of peaks
25972 (qval < 1E-05)

Base call quality data from DBCLS SRA