SRX079869
GSM746563: H3K27me3 G1E ChIPSeq rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Blood
Cell type
G1E
Tissue
Blood
Lineage
cellLine
Description
Gata1- erythroid progenitor

Attributes by original data submitter

Sample

source_name
G1E cells
strain
129
genotype/variation
Gata1-null
developmental stage/cell type
Erythroid committed, immature progenitor murine cell line
chip antibody target
H3K27me3
chip_antibody_provider
Millipore
chip_antibody_catalog
07-449
chip_antibody_lot
DAM1588246

Sequenced DNA Library

library_name
GSM746563: H3K27me3_G1E_ChIPSeq_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
22324068
Reads aligned (%)
85.7
Duplicates removed (%)
13.0
Number of peaks
5655 (qval < 1E-05)

mm9

Number of total reads
22324068
Reads aligned (%)
85.5
Duplicates removed (%)
13.2
Number of peaks
5707 (qval < 1E-05)

Base call quality data from DBCLS SRA