SRX077029
GSM742022: CD8-Gata3-KO-Gata3 [ChIP-Seq]

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Gata3

Cell type

Cell type Class
Blood
Cell type
CD8+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD8 cells
strain
C57BL/6 Gata3 KO
cell type
CD8 cells
chip antibody
anti-Gata3 (558686, BD bioscience)

Sequenced DNA Library

library_name
GSM742022: CD8-Gata3-KO-Gata3 [ChIP-Seq]
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
7293572
Reads aligned (%)
34.5
Duplicates removed (%)
9.6
Number of peaks
124 (qval < 1E-05)

mm9

Number of total reads
7293572
Reads aligned (%)
34.4
Duplicates removed (%)
9.8
Number of peaks
120 (qval < 1E-05)

Base call quality data from DBCLS SRA