SRX070881
GSM732903: CUTLL-Notch1-1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NOTCH1

Cell type

Cell type Class
Blood
Cell type
CUTLL1
NA
NA

Attributes by original data submitter

Sample

source_name
CUTLL1: Notch1 Chromatin IP
cell line
CUTLL1
disease
T lymphoblastic leukemia/lymphoma
cell type
T lymphocyte
antibody
Rabbit anti Notch1

Sequenced DNA Library

library_name
GSM732903: CUTLL-Notch1-1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
24903749
Reads aligned (%)
95.5
Duplicates removed (%)
2.9
Number of peaks
4888 (qval < 1E-05)

hg19

Number of total reads
24903749
Reads aligned (%)
94.6
Duplicates removed (%)
4.3
Number of peaks
4887 (qval < 1E-05)

Base call quality data from DBCLS SRA