SRX069211
GSM736618: Stam HRGEC 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Kidney
Cell type
HRGEC
Tissue
kidney
Lineage
mesoderm
Description
renal glomerular endothelial cells

Attributes by original data submitter

Sample

source_name
HRGEC
biomaterial_provider
ScienCell
cell
HRGEC
cell organism
human
cell description
Human Renal Glomerular Endothelial Cells
cell karyotype
Normal
cell lineage
Endothelial
cell sex
U
replicate
2

Sequenced DNA Library

library_name
GSM736618: Stam_HRGEC_2
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
29728196
Reads aligned (%)
98.7
Duplicates removed (%)
16.9
Number of peaks
50559 (qval < 1E-05)

hg19

Number of total reads
29728196
Reads aligned (%)
97.8
Duplicates removed (%)
19.2
Number of peaks
50192 (qval < 1E-05)

Base call quality data from DBCLS SRA