SRX069157
GSM736564: Stam HeLa-S3 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa-S3
biomaterial_provider
ATCC
biomaterial_type
immortalized cell line
line
HeLa-S3
cell
HeLa-S3
cell organism
Human
cell description
cervical carcinoma
cell karyotype
cancer
cell lineage
ectoderm
cell sex
F
replicate
1

Sequenced DNA Library

library_name
GSM736564: Stam_HeLa-S3_1
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
47007462
Reads aligned (%)
96.4
Duplicates removed (%)
46.6
Number of peaks
60711 (qval < 1E-05)

hg19

Number of total reads
47007462
Reads aligned (%)
96.0
Duplicates removed (%)
47.7
Number of peaks
60534 (qval < 1E-05)

Base call quality data from DBCLS SRA