SRX069148
GSM736555: Stam HPAF 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Cardiovascular
Cell type
HPAF
Tissue
blood vessel
Lineage
mesoderm
Description
pulmonary artery fibroblasts

Attributes by original data submitter

Sample

source_name
HPAF
biomaterial_provider
ScienCell
cell
HPAF
cell organism
Human
cell description
Human Pulmonary Artery Fibroblasts
cell sex
U
replicate
1

Sequenced DNA Library

library_name
GSM736555: Stam_HPAF_1
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
69203359
Reads aligned (%)
95.8
Duplicates removed (%)
45.6
Number of peaks
133026 (qval < 1E-05)

hg19

Number of total reads
69203359
Reads aligned (%)
95.3
Duplicates removed (%)
46.9
Number of peaks
132795 (qval < 1E-05)

Base call quality data from DBCLS SRA