SRX069147
GSM736554: Stam HBMEC 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Cardiovascular
Cell type
HBMEC
Tissue
blood vessel
Lineage
mesoderm
Description
brain microvascular endothelial cells

Attributes by original data submitter

Sample

source_name
HBMEC
biomaterial_provider
ScienCell
cell
HBMEC
cell organism
Human
cell description
Human Brain Microvascular Endothelial Cells
cell sex
U
replicate
2

Sequenced DNA Library

library_name
GSM736554: Stam_HBMEC_2
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
43068197
Reads aligned (%)
97.8
Duplicates removed (%)
21.2
Number of peaks
84499 (qval < 1E-05)

hg19

Number of total reads
43068197
Reads aligned (%)
97.2
Duplicates removed (%)
22.3
Number of peaks
84032 (qval < 1E-05)

Base call quality data from DBCLS SRA