SRX069133
GSM736540: Stam HCF 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Cardiovascular
Cell type
HCF
Tissue
heart
Lineage
mesoderm
Description
cardiac fibroblasts

Attributes by original data submitter

Sample

source_name
HCF
biomaterial_provider
ScienCell
cell
HCF
cell organism
Human
cell description
Human Cardiac Fibroblasts
cell lineage
mesoderm
cell sex
U
replicate
2

Sequenced DNA Library

library_name
GSM736540: Stam_HCF_2
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
47500001
Reads aligned (%)
96.3
Duplicates removed (%)
44.2
Number of peaks
99072 (qval < 1E-05)

hg19

Number of total reads
47500001
Reads aligned (%)
95.9
Duplicates removed (%)
45.2
Number of peaks
98862 (qval < 1E-05)

Base call quality data from DBCLS SRA