SRX069130
GSM736537: Stam HA-sp 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Neural
Cell type
HA-sp
Tissue
spinal cord
Lineage
ectoderm
Description
astrocytes spinal cord

Attributes by original data submitter

Sample

source_name
HA-sp
biomaterial_provider
ScienCell
cell
HA-sp
cell organism
human
cell description
Human astrocytes spinal cord
cell karyotype
Normal
cell lineage
Astrocytic
cell sex
U
replicate
1

Sequenced DNA Library

library_name
GSM736537: Stam_HA-sp_1
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
5262220
Reads aligned (%)
99.1
Duplicates removed (%)
21.8
Number of peaks
9583 (qval < 1E-05)

hg19

Number of total reads
5262220
Reads aligned (%)
98.4
Duplicates removed (%)
23.1
Number of peaks
9555 (qval < 1E-05)

Base call quality data from DBCLS SRA