SRX069113
GSM736520: Stam NHDF-Ad 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Epidermis
Cell type
NHDF
Primary Tissue
Skin
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
NHDF-Ad
biomaterial_provider
Lonza
cell
NHDF-Ad
cell organism
Human
cell description
Adult Normal Human Dermal Fibroblasts
cell sex
F
replicate
2

Sequenced DNA Library

library_name
GSM736520: Stam_NHDF-Ad_2
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
51464159
Reads aligned (%)
93.3
Duplicates removed (%)
35.6
Number of peaks
163366 (qval < 1E-05)

hg19

Number of total reads
51464159
Reads aligned (%)
92.8
Duplicates removed (%)
36.7
Number of peaks
163040 (qval < 1E-05)

Base call quality data from DBCLS SRA