SRX069109
GSM736516: Stam HCM 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Cardiovascular
Cell type
HCM
Tissue
heart
Lineage
mesoderm
Description
cardiac myocytes

Attributes by original data submitter

Sample

source_name
HCM
biomaterial_provider
ScienCell
cell
HCM
cell organism
Human
cell description
Human Cardiac Myocytes
cell lineage
mesoderm
cell sex
U
replicate
1

Sequenced DNA Library

library_name
GSM736516: Stam_HCM_1
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
49423158
Reads aligned (%)
97.1
Duplicates removed (%)
45.6
Number of peaks
128100 (qval < 1E-05)

hg19

Number of total reads
49423158
Reads aligned (%)
96.5
Duplicates removed (%)
46.9
Number of peaks
127884 (qval < 1E-05)

Base call quality data from DBCLS SRA