Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Lung

Cell type

A549

Primary Tissue

Lung

Tissue Diagnosis

Carcinoma

Sample

source_name

A549

biomaterial_provider

ATCC

cell

A549

cell organism

Human

cell description

epithelial cell line "This line was initiated in 1972 by D.J. Giard, et al. through explant culture of lung carcinomatous tissue from a 58-year-old Caucasian male." - ATCC, derived from a lung carcinoma tissue. (PMID: 175022)

cell karyotype

cancer

cell lineage

endoderm

cell sex

M

replicate

2

Sequenced DNA Library

library_name

GSM736506: Stam_A549_2

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

hg38

Number of total reads

29163654

Reads aligned (%)

97.3

Duplicates removed (%)

37.8

Number of peaks

46159 (qval < 1E-05)

hg19

Number of total reads

29163654

Reads aligned (%)

96.6

Duplicates removed (%)

39.2

Number of peaks

46045 (qval < 1E-05)