SRX069098
GSM736505: Stam AoAF 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Cardiovascular
Cell type
AoAF
Tissue
blood vessel
Lineage
mesoderm
Description
aortic adventitial fibroblast cells

Attributes by original data submitter

Sample

source_name
AoAF
biomaterial_provider
Lonza
cell
AoAF
cell organism
Human
cell description
Normal Human Aortic Adventitial Fibroblast Cells
cell sex
F
replicate
2

Sequenced DNA Library

library_name
GSM736505: Stam_AoAF_2
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
26291016
Reads aligned (%)
97.1
Duplicates removed (%)
24.1
Number of peaks
94275 (qval < 1E-05)

hg19

Number of total reads
26291016
Reads aligned (%)
96.4
Duplicates removed (%)
26.2
Number of peaks
94194 (qval < 1E-05)

Base call quality data from DBCLS SRA