SRX069096
GSM736503: Stam HPF 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Lung
Cell type
HPF
Tissue
lung
Description
pulmonary fibroblasts isolated from lung tissue

Attributes by original data submitter

Sample

source_name
HPF
biomaterial_provider
ScienCell
cell
HPF
cell organism
Human
cell description
Human Pulmonary Fibroblasts isolated from lung tissue
cell sex
U
replicate
2

Sequenced DNA Library

library_name
GSM736503: Stam_HPF_2
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
51672143
Reads aligned (%)
96.9
Duplicates removed (%)
36.9
Number of peaks
100003 (qval < 1E-05)

hg19

Number of total reads
51672143
Reads aligned (%)
96.2
Duplicates removed (%)
38.5
Number of peaks
103955 (qval < 1E-05)

Base call quality data from DBCLS SRA