SRX067517
GSM733766: Bernstein Osteobl H2A.Z

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H2A.Z

Cell type

Cell type Class
Bone
Cell type
Osteobl
Tissue
bone
Lineage
mesoderm
Description
osteoblasts (NHOst)

Attributes by original data submitter

Sample

source_name
Osteobl
biomaterial_provider
Lonza
lab
Broad
lab description
Bernstein - Broad Institute
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell organism
human
cell description
osteoblasts (NHOst)
cell lineage
mesoderm
cell sex
U
antibody antibodydescription
Rabbit polyclonal antibody raised against a peptide corresponding to the C-terminus of H2AZ. Antibody Target: H2AZ
antibody targetdescription
H2A.Z is a sequence variant of Histone H2A.
antibody vendorname
Millipore
antibody vendorid
07-594
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH001056
replicate
1,2
softwareversion
ScriptureVPaperR3

Sequenced DNA Library

library_name
GSM733766: Bernstein_Osteobl_H2A.Z
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
75134340
Reads aligned (%)
89.1
Duplicates removed (%)
12.5
Number of peaks
49943 (qval < 1E-05)

hg19

Number of total reads
75134340
Reads aligned (%)
88.4
Duplicates removed (%)
14.4
Number of peaks
49681 (qval < 1E-05)

Base call quality data from DBCLS SRA