Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K27me3
wikigenes
PDBj
CellType: NH-A
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX067480
GSM733729: Bernstein NH-A H3K27me3
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K27me3
Cell type
Cell type Class
Neural
Cell type
NH-A
Tissue
brain
Lineage
ectoderm
Description
astrocytes (also called Astrocy)
Attributes by original data submitter
Sample
source_name
NH-A
biomaterial_provider
Lonza
donor_id
ENCDO916IIE
biomaterial_type
primary cell
cell_type
astrocyte
lab
Broad
lab description
Bernstein - Broad Institute
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell organism
human
cell description
astrocytes (also called Astrocy)
cell karyotype
normal
cell lineage
ectoderm
antibody antibodydescription
rabbit polyclonal. Antibody Target: H3K27me3
antibody
H3K27me3
antibody targetdescription
Histone H3 (tri-methyl K27). Marks promoters that are silenced by Polycomb proteins in a given lineage; large domains are found at inactive developmental loci.
antibody vendorname
Millipore
antibody vendorid
07-449
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH001027
replicate
1,2
softwareversion
ScriptureVPaperR3
Sequenced DNA Library
library_name
GSM733729: Bernstein_NH-A_H3K27me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
40436329
Reads aligned (%)
80.1
Duplicates removed (%)
8.7
Number of peaks
387 (qval < 1E-05)
hg19
Number of total reads
40436329
Reads aligned (%)
79.5
Duplicates removed (%)
9.8
Number of peaks
951 (qval < 1E-05)
Base call quality data from
DBCLS SRA