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For hg38
BigWig
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K36me3
wikigenes
PDBj
CellType: NHEK
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX067477
GSM733726: Bernstein NHEK H3K36me3
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K36me3
Cell type
Cell type Class
Epidermis
Cell type
NHEK
Tissue
skin
Lineage
ectoderm
Description
epidermal keratinocytes
Attributes by original data submitter
Sample
source_name
NHEK
biomaterial_provider
Lonza
donor_id
ENCDO268AAA,ENCDO303AAA
biomaterial_type
primary cell
cell_type
keratinocyte
lab
Broad
lab description
Bernstein - Broad Institute
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell organism
human
cell description
epidermal keratinocytes
cell sex
U
antibody antibodydescription
rabbit polyclonal. Antibody Target: H3K36me3
antibody
H3K36me3
antibody targetdescription
Specific for histone H3 tri methylated at lysine 36, weakly reacts with H3K36me2. Marks regions of RNAPII elongation, including coding and non-coding transcripts.
antibody vendorname
abcam
antibody vendorid
ab9050
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000072
replicate
1,3,2
softwareversion
ScriptureVPaperR3
Sequenced DNA Library
library_name
GSM733726: Bernstein_NHEK_H3K36me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
34906722
Reads aligned (%)
60.5
Duplicates removed (%)
2.7
Number of peaks
205 (qval < 1E-05)
hg19
Number of total reads
34906722
Reads aligned (%)
60.2
Duplicates removed (%)
3.2
Number of peaks
218 (qval < 1E-05)
Base call quality data from
DBCLS SRA