SRX067476
GSM733725: Bernstein H1-hESC H3K36me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K36me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
H1-hESC
biomaterial_provider
WiCell Research Institute
biomaterial_type
stem cell
line
H1-hESC
lab
Broad
lab description
Bernstein - Broad Institute
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell organism
human
cell description
embryonic stem cells
cell lineage
inner cell mass
antibody antibodydescription
rabbit polyclonal. Antibody Target: H3K36me3
antibody
H3K36me3
antibody targetdescription
Specific for histone H3 tri methylated at lysine 36, weakly reacts with H3K36me2. Marks regions of RNAPII elongation, including coding and non-coding transcripts.
antibody vendorname
abcam
antibody vendorid
ab9050
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000088
replicate
1,2
softwareversion
ScriptureVPaperR3

Sequenced DNA Library

library_name
GSM733725: Bernstein_H1-hESC_H3K36me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
40826007
Reads aligned (%)
74.6
Duplicates removed (%)
6.8
Number of peaks
408 (qval < 1E-05)

hg19

Number of total reads
40826007
Reads aligned (%)
74.1
Duplicates removed (%)
7.7
Number of peaks
918 (qval < 1E-05)

Base call quality data from DBCLS SRA