Curated Sample Data


Genome
hg19
Antigen Class
Histone
Antigen
H3K9me1
Cell type Class
Cardiovascular
Cell type
HUVEC

Cell type information


Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal

Attributes by Original Data Submitter


source_name
HUVEC
biomaterial_provider
Lonza
lab
Broad
lab description
Bernstein - Broad Institute
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell organism
human
cell description
umbilical vein endothelial cells
antibody antibodydescription
rabbit polyclonal. Antibody Target: H3K9me1
antibody targetdescription
Histone H3 (mono-methyl K9). Is associated with active and accessible regions. NOTE CONTRAST to H3K9me3 which is associated with repressive heterochromatic state.
antibody vendorname
abcam
antibody vendorid
ab8896
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000060
labversion
Illumina_GA2e and Illumina_GA2x
replicate
1,3,2
softwareversion
ScriptureVPaperR3

Metadata from Sequence Read Archive

Library Description


library_name
GSM733703: Bernstein_HUVEC_H3K9me1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Platform Information


instrument_model
Illumina Genome Analyzer II

External Database Query

Logs in read processing pipeline


Number of total reads
33339635
Reads aligned (%)
66.2
Duplicates removed (%)
5.0
Number of peaks
1486 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA