SRX067440
GSM733689: Bernstein HeLa-S3 H4K20me1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H4K20me1

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa-S3
biomaterial_provider
ATCC
lab
Broad
lab description
Bernstein - Broad Institute
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell organism
human
antibody antibodydescription
rabbit polyclonal. Antibody Target: H4K20me1
antibody targetdescription
Histone H4 (mono-methyl K20). Is associated with active and accessible regions. In mammals, PR-Set7 specifically catalyzes H4K20 monomethylation. NOTE CONTRAST to H3K20me3 which is associated with heterochromatin and DNA repair.
antibody vendorname
abcam
antibody vendorid
ab9051
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH001013
replicate
1,2
softwareversion
ScriptureVPaperR3

Sequenced DNA Library

library_name
GSM733689: Bernstein_HeLa-S3_H4K20me1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
53114405
Reads aligned (%)
69.6
Duplicates removed (%)
31.6
Number of peaks
1193 (qval < 1E-05)

hg19

Number of total reads
53114405
Reads aligned (%)
68.9
Duplicates removed (%)
33.1
Number of peaks
1165 (qval < 1E-05)

Base call quality data from DBCLS SRA