Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9ac

Cell type

Cell type Class
Muscle
Cell type
HSMM
Tissue
muscle
Lineage
mesoderm
Description
skeletal muscle myoblasts

Attributes by original data submitter

Sample

source_name
HSMMtube
biomaterial_provider
Lonza
lab
Broad
lab description
Bernstein - Broad Institute
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell organism
human
cell description
skeletal muscle myotubes differentiated from the HSMM cell line
cell lineage
mesoderm
cell sex
U
antibody antibodydescription
rabbit polyclonal. Antibody Target: H3K9ac
antibody targetdescription
Histone H3 (acetyl K9). As with H3K27ac, associated with transcriptional initiation and open chromatin structure. It remains unknown whether acetylation can have different consequences depending on the specific lysine residue targeted. In general, though, there appears to be high redundancy. Histone acetylation is notable for susceptibility to small molecules and drugs that target histone deacetylases.
antibody vendorname
abcam
antibody vendorid
ab4441
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH001001
replicate
1,2
softwareversion
ScriptureVPaperR3

Sequenced DNA Library

library_name
GSM733639: Bernstein_HSMMtube_H3K9ac
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
44057931
Reads aligned (%)
75.3
Duplicates removed (%)
18.3
Number of peaks
37281 (qval < 1E-05)

hg19

Number of total reads
44057931
Reads aligned (%)
74.9
Duplicates removed (%)
19.0
Number of peaks
37119 (qval < 1E-05)

Base call quality data from DBCLS SRA