SRX064487
GSM727577: hESC H3K27me3 ChIP-Seq pool

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H9
NA
NA

Attributes by original data submitter

Sample

source_name
human embryonic stem cells
cell line
H9
cell type
embryonic stem cells
passages
40-50
chip antibody
H3K27me3, rabbit polyclonal
chip antibody manufacturer
Upstate

Sequenced DNA Library

library_name
GSM727577: hESC H3K27me3 ChIP-Seq pool
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
53468516
Reads aligned (%)
54.2
Duplicates removed (%)
7.6
Number of peaks
7760 (qval < 1E-05)

hg19

Number of total reads
53468516
Reads aligned (%)
53.3
Duplicates removed (%)
10.5
Number of peaks
7477 (qval < 1E-05)

Base call quality data from DBCLS SRA