SRX063917
GSM726982: MCF7 ERG(SantaCruz sc353 C20) no

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ERG

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF7 (cancer)
cell type
hematopoietic cell
disease state
cancer
treatment
no
antibody
ERG
antibody vendor
SantaCruz
antibody catalog number
sc353
antibody lot/batch number
C20

Sequenced DNA Library

library_name
GSM726982: MCF7_ERG(SantaCruz_sc353_C20)_no
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
33944981
Reads aligned (%)
48.5
Duplicates removed (%)
66.2
Number of peaks
23606 (qval < 1E-05)

hg19

Number of total reads
33944981
Reads aligned (%)
48.2
Duplicates removed (%)
67.0
Number of peaks
23440 (qval < 1E-05)

Base call quality data from DBCLS SRA