SRX063910
GSM726806: Lsh+/+ H3K4me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
Lsh+/+ H3K4me3 sequence
cell type
Mouse embryonic fibroblast
antibody
anti-histone 3 lysine 4 trimethylation (anti-H3K4me3) (Abcam)
genotype/variation
Lsh+/+

Sequenced DNA Library

library_name
GSM726806: Lsh+/+ H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
8084825
Reads aligned (%)
43.2
Duplicates removed (%)
13.2
Number of peaks
6549 (qval < 1E-05)

mm9

Number of total reads
8084825
Reads aligned (%)
43.1
Duplicates removed (%)
13.3
Number of peaks
6603 (qval < 1E-05)

Base call quality data from DBCLS SRA